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MicroRNA-24-3p regulates neuronal differentiation by modulating
                                                   hippocalcin expression

                                         Min-Jeong Kang, Shin-Young Park*, and Joong-Soo Han*
                           1 Department of Biomedical Sciences, Graduate School of Biomedical Science & Engineering, and  Biomedical
                                                                                             2
                          Research Institute and Department of Biochemistry & Molecular Biology, College of Medicine, Hanyang University,
                                         222 Wangsimni-ro, Seongdong-gu, Seoul 04763, Republic of Korea.
                               E-mail : jshan@hanyang.ac.kr, ttokttok@hanyang.ac.kr, TEL : 82-2-2220-0623, 82-2-2220-0610.


     ABSTRACT                                            INTRODUCTION
     Hippocalcin (HPCA) is a neuron-specific calcium-binding protein predominantly expressed in the  MicroRNAs are small, highly conserved non-coding RNA molecules of approximately 22 nucleotides.
     nervous system. In the present study, we demonstrate that HPCA regulates neuronal differentiation.  They can modulate gene expression through complementary base pairing of the seed sequence located
     We observed that the expression level of HPCA was increased during neuronal differentiation.  in the 3’UTR of the target mRNA, leading to the translational suppression and/or destabilization of the
     Depletion of HPCA inhibited both neurite outgrowth and synaptophysin (SYP) expression. shRNA-  target mRNAs [1]. It is widely accepted that a single miRNA has the potential to inhibit the expression of
     mediated knockdown of HPCA in the hippocampal dentate gyrus exhibited manic-like behavior,  hundreds of target mRNAs and, conversely, individual mRNAs are commonly targeted by multiple
     including hyperactivity, decreased anxiety-like behavior, reduced depressive-related behavior, and  miRNAs [2]. Hence, miRNAs serve as key regulators in various biological processes, such as
     impaired learning and memory. Furthermore, HPCA depletion reduced the levels of synaptic plasticity-  proliferation, differentiation, apoptosis, metabolism, and development [3].
     related proteins. Thus, HPCA regulates neuronal differentiation both in vitro and in vivo. Interestingly,  Hpca is a high-affinity calcium-binding protein expressed most
     we also found that the expression of HPCA was modulated by miR-24-3p. We showed that co-  abundantly in pyramidal cells of the hippocampal CA1 region [4].
     transfection of a plasmid containing the miR-24-3p binding site from the 3'-untranslated region of the  It belongs to the family of EF-hand-containing neuronal calcium
     HPCA gene and an miR-24-3p mimic effectively reduced luminescence activity. miR-24-3p expression  sensor proteins that possess a Ca2+/myristoyl switch allowing
     was decreased during differentiation, suggesting that the decreased expression level of miR-24-3p  translocation to membranes in response to increased cytosolic
     might have upregulated mRNA expression of HPCA. As expected, upregulation of miR-24-3p by an  Ca2+ concentration [5]. Our previous study showed that HPCA
     miRNA mimic led to reduced HPCA expression, accompanied by diminished neuronal differentiation. In  increases NeuroD expression, resulting in neurite outgrowth
     contrast, downregulation of miR-24-3p by an antisense inhibitor promoted neurite outgrowth as well as  during the differentiation of H19-7 cells [6]. Moreover, it was found
     levels of SYP expression. Taken together, these results suggest that miR-24-3p is an important miRNA  to promote neuronal differentiation through activation of the
     that regulates neuronal differentiation by controlling HPCA expression.
                                                        PKCα/PLD1/SHP1 cascade, leading to the inhibition of astrocytic
     Keywords: Hippocalcin, miR-24-3p, neuronal differentiation, Synaptophysin, SH-SY5Y cells  differentiation in cortical neural stem cells [7].
     RESULTS
     Fig. 1 Differentiation induced expression of HPCA in SH-SY5Y cells  Fig. 3 HPCA deficiency in DG exhibited manic-like behavior and   Fig.5 Identification of miR-24-3p as a potential upstream regulator of
                                       inhibited hippocampal neurogenesis.  HPCA
                                                                                              (A,  B)  HeLa  cells  were
                                                                                              transiently transfected with a
                                                                                              control miRNA mimic or an
                                                                                              miR-24-3p mimic for 2 days.
                                                                                              (C, D) Cells were transfected
                                                                                              with a control miRNA inhibitor
                                                                                              or an miR-24-3p inhibitor for 3
                                                                                              days. The graph shows mean
                                                                                              densities as fold increases
                                                                                              from  three  independent
                                                                                              experiments (mean ± SEM).
                                                                                              **P < 0.01, ***P < 0.001
                                                                                              compared with the control.
     (A, B) SH-SY5Y cells were induced to differentiate by adding 50 μM RA for the
     indicated number of days. (A) The mRNA levels of presynaptic marker, SYP and HPCA
     were determined by RT-qPCR. (B) Proteins were analyzed by western blotting with  Fig.6 miR-24-3p regulates neuronal differentiation, presumably
     anti-HPCA, anti-SYP, and anti-calnexin antibodies. (C) Cells were stained with DAPI  by reducing HPCA expression in SH-SY5Y cells
     (blue) and an anti-SYP antibody (green) to visualize neurite extensions. Scale bar, 100
     μm. (D) Neurite lengths were measured in randomly selected areas in three
     independent experiments. **P < 0.01, ***P < 0.001 compared with day 0 of
     differentiation (means ± SEM).
     Fig. 2 Effect of HPCA on the neuronal differentiation of SH-SY5Y
     cells
                                       (A) Design of the lentiviral construct expressing mouse Hpca shRNAs. (B) Timeline of
                                       experimental paradigm. (C) Fixed brains 1 month after infusion of the virus were
                                       immunostained with an anti-GFP antibody (green) and DAPI (blue) to confirm the
                                       localization of lentivirus infection in the DG. Scale bar, 80 μm. (D) Proteins were analyzed
                                       by western blotting with anti-calnexin, anti-PSD95, anti-NMDAR2C, anti-SHANK1, and
                                       anti-calnexin antibodies. (E, F) Locomotor activity. (G) Contextual fear memory. (H)
                                       NSFT. (I) FST. Data are mean ± SEM.
                                       Fig. 4 Validation of HPCA as a direct target of miR-24-3p
                                                                         (A) Mature miR-24-3p levels during the differentiation of SH-SY5Y cells were quantified
                                                                         using TaqMan RT-qPCR. (B, C) Differentiation was induced in SH-SY5Y cells transfected
                                                                         with a control miRNA mimic or an miR-24-3p mimic. (D) Fixed cells were stained with an
                                                                         anti-SYP antibody (green) and DAPI (blue). Scale bar, 100 μm. (E) Neurite lengths were
                                                                         measured in randomly selected areas from three experiments (mean ± SEM). *P < 0.05,
                                                                         **P < 0.01, ***P < 0.001 compared with the control.
                                                                         Fig.7 Inhibition of miR-24-3p promoted the neuronal differentiation of
                                                                         SH-SY5Y cells
     (A, B) SH-SY5Y cells were transiently transfected with control siRNA or HPCA siRNA,
     and then incubated for 7 days after the addition of RA. (C) Fixed cells were stained with
     an anti-SYP antibody (green) and DAPI (blue). Scale bar, 100 μm. (D) Neurite lengths  (A) Map of representative bicistronic firefly/Renilla luciferase (FLuc/RLuc) plasmids
     were measured in randomly selected areas from five independent cultures. (E, F) SH-  containing HPCA mRNA 3'UTRs with putative miR-24-3p binding sites (WT) or mutated
     SY5Y cells were transduced with pMSCV-IRES-EGFP or pMSCV-HPCA-Myc-IRES-  binding sites (Mut). (B) A control miRNA mimic or an miR-24-3p mimic was co-
     EGFP and induced to differentiate for 7 days. (G) Immunofluorescence was used to  transfected with HPCA-3'UTR-WT or HPCA-3'UTR-Mut into HeLa cells. (C) A control  (A, B) SH-SY5Y cells were transfected with a control miRNA inhibitor or an miR-24-3p
     visualize SYP (green) at day 7 of differentiation, with or without overexpression of  miRNA inhibitor or an miR-24-3p inhibitor was co-transfected with HPCA-3'UTR-WT or  inhibitor and were allowed to differentiate for 5 days. (C) Immunofluorescence was used
     HPCA. Nuclei were stained with DAPI (blue). (H) Neurite lengths were measured in  HPCA-3'UTR-Mut into HeLa cells. The relative activity of luciferase in control miRNA  to visualize SYP (green) at day 7 of differentiation. Scale bar, 100 μm. (D) Neurite lengths
     randomly selected areas from five slides of each condition. **P < 0.01, ***P < 0.001  inhibitor-transfected cells was set to 1.0. **, P < 0.01; ***, P < 0.001; n.s., not significant.  were measured in random areas from five cultures (mean ± SEM). **P < 0.01, ***P
     compared with the control (mean ± SEM).                             < 0.001 compared with the control miRNA inhibitor.
     CONCLUSION                                          REFERENCES
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