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Splice-dependent trans-synaptic PTPδ-IL1RAPL1 interaction regulates synapse formation                                                                                                                                                                                                                                                                                                                                         Center for

                                                                                                                                                                                                                                                                                                                                                                                                                                       Synaptic


         and non-REM sleep                                                                                                                                                                                                                                                                                                                                                                                                             Brain




                                                                                                                                                                                                                                                                                                                                                                                                                                       Dysfunctions

          Haram Park*, Yeonsoo Choi*, Hwajin Jung*, Seoyeong Kim*, Suho Lee, Hyemin Han, Hanseul Kweon, Suwon Kang,


          Woong Seob Sim, Frank Koopmans, Esther Yang, Hyun Kim, August B Smit, Yong Chul Bae, Eunjoon Kim






         The LAR family of receptor tyrosine phosphatases with three known members has been suggested to be present at presynaptic sites and trans-synaptically interact



         with various postsynaptic adhesion molecules to regulate excitatory and inhibitory synapse development and function. However, related in vivo evidence at cellular and


         subcellular levels has been limited. We found, using several PTPδ-related mouse lines, that PTPδ is present at excitatory presynaptic sites and required for excitatory



         synapse maintenance through the trans-synaptic interaction with IL1RAPL1. Deletion of PTPδ leads not only to synaptic transmission deficits and structural decreases



         in postsynaptic density, but also near complete tyrosine dephosphorylation of IL1RAPL1 at two novel residues. Behaviorally, PTPδ global KO mice show strong


         hyperactivity that is mimicked by PTPδ KOs restricted to excitatory and inhibitory neurons, and displays decreased non-REM sleep. These behaviors, as well as the



         synaptic and biochemical deficits seen at the cellular level, are recapitulated in mutant mice lacking solely the miniexon A of PTPδ, which does not affect PTPδ



         expression but is critical for stable binding between PTPδ and IL1RAPL1. These results suggest that interaction of PTPδ with its trans-synaptic binding partner is


         necessary for excitatory synapse development throughout the brain, the disruption of which leads to the manifestation of numerous neuropsychiatry-associated



         phenotypes in mice.






               a                                                                                                            (KDa)         WT HT Ho                                                                          a                                               b                                        Whole brain lysate




                                                                                                                               135     -                                 PTPδ-tdTomato                                                 PTPδ-ECD                                             WT KO                  WT KO                 meA      +/+ meA    –/– meA     +/+ meA    –/–


                                                                                                                               100     -
                             IG1-3                      FNIII 1-3,8                            D1-2             td                                                       PTPδ                                                                                                                                                                                                                PTPδ


                                                                                                                                  75   -                                 [IB: anti-PTPδ, C-term]                                                1                                                                                                                                            [IB: anti-PTPδ, N-term]
                                    Extracellular domain                                   Intracellular                          48   -                                 β-actin



              b                                                                    domain + tdTomato                              35   -                                 [IB: anti-β-actin]                                                         3                                                                                                                                        β-actin
                                                                                                                                                                                                                                                                                                                                                                                             [IB: anti-β-actin]



                                                                                                       DAPI                           CC                                                                                                  1                                 c            0.9


                                                            SO                                  tdTomato
                                                            SP                                                                        SO
                          CC                                                                                                                                                                                                                        2
                                                            SR                                                                        SP                                                                                                                                                                         0.5 mV                                                                                             *


                                                           SLM                                                                        SR                                                                                           2                                                     0.6             3 ms                                                                                             **

                                                            MO                                                                                                                                                                                    1                                                                                                                                               **                      *

                                                            SG                                                                       SLM                                                                                                                                              fEPSP slope (mV/ms)

                                                            PO                                                                                                                                                                                                                                                                                                                             *

                                                                                                                                     MO                                                                                                       3                                          0.3                                                                                           *

                                                                                                                                                                                                                                  IL1RAPL1-ECD
                                                                                                                                      SG                                                 tdTomato


                      500                                                                                                             PO                                                 DAPI                                                FNIII           meA                                                                                 [Raw]                                                           [Fitted]
              c                                                                                                                               0      25       50      75 100                                                                 IG              meB                         0.0   0.0           0.2           0.4            0.6           0.8      0.0 0.1 0.2 0.3 0.4                      0.5 0.6          0.7



                                                         tdTomato                                                                                       Intensity                                                                                                                                              Fiber volley (mV)                                                 Fiber volley (mV)
                                                            vGluT2
                                                                              Figure 1. PTPδ is localized to the excitatory


                                                                              presynapse                                                                                                                                   d           Whole brain lysate                                   IP: IL1RAPL1                                                                        Figure 4. Deletion of meA in PTPδ


                                                                              (a) Design and western blot confirmation of                                                                                                                    +/+        –/–        +/+        –/–            +/+        –/–        +/+        –/–                                               recapitulates IL1RAPL1

                                                                              PTPδ-tdTomato reporter mice. (b) Hippocampal imaging                                                                                                   meA       meA        meA        meA            meA        meA        meA        meA                                                        dephosphorylation and functional


                                                                              and signal distribution analysis of reporter mice. (c) EM                                                                                                                                                                                               pTyr, IL1RAPL1                            impairment of SLM synapses

                                                                              DAB/immunogold staining of reporter and vGluT2                                                                                                                                                                                                          [IB: anti-pTyr (4G10)]                    (a) Crystal structure-based diagram of


                                                                              signals.                                                                                                                                                                                                                                                                                          PTPδ-IL1RAPL1 trans-synaptic interaction.
                                                                                                                                                                                                                                                                                                                                                                                (b) Western blot of PTPδ in PTPδ KO and


                                                                                                                                                                                                                                                                                                                                      IL1RAPL1                                  meA mice reveal no changes in PTPδ levels
                                                                                                                                                                                                                                                                                                                                                                                          –/–
                                                                                                                                                                                                                                                                                                                                      [IB: anti-IL1RAPL1, stripped]             due to deletion of meA. (c) Impairment of

               a                  loxP         Exon 13 loxP                    Exon 14                                                  WT          HT         KO                                                                                                                                                                                                               input/output ratios in the SLM of the CA1 is



                                                                                                                                                                                                                                                                                                                                                                                                                           –/–
                                                                                                Floxed allele             100                                                                                                                                                                                                         β-actin                                   recapitulated in meA mice. (d)
                                                                                                                                                                            PTPδ                                                                                                                                                      [IB: anti-β-actin, stripped]              Dephosphorylation of IL1RAPL1 is

                                                                                                HTNC                        75                                              [IB: anti-PTPδ, N-term]                                                                                                                                                                             recapitulated in meA mice.
                                                                                                                                                                                                                                                                                                                                                                                                                           –/–

                                                                                                Deleted allele               48                                             β-actin

               b             0.9                                                                                                                                            [IB: anti-β-actin]                           a                                                                                                                 c






                                                                                                                                                        **                                                                        90                                WT                                              cWT                            90                                 meA  +/+
                         fEPSP slope (mV/ms)
                                                    0.5 mV                                                                                                                                                                        75                                KO                                              EMX1-cre; cKO                  75                                 meA  –/–

                             0.6             3 ms                                                                                              **              *
                                                                                                                                                                                                                              Distance moved (m)
                                                                                                                                        *                                                                                         60                                                                                                               60





                                                                                                                                                                                                                                  45                                                                                                           Distance moved (m)  45
                             0.3



                                                                                                                                                                                                                                  30                                                                                                               30



                                                                                     [Raw]                                                            [Fitted]                                                                    15                                                                                                               15

                             0.0                                                                                                                                                                                                                                                                                                                                                                            Figure 5. Disruption of
                                  0.0            0.2           0.4            0.6           0.8      0.0 0.1 0.2 0.3 0.4                       0.5 0.6          0.7                                                                 0                                                                                                                0                                                      PTPδ-IL1RAPL1 interaction


                 c                                 Fiber volley (mV)                                                  Fiber volley (mV)                                                                                                    3 6 9 12 15 18 21 24                           3 6 9 12 15 18 21 24                                              3 6 9 12 15 18 21 24                            leads to behavioral deficits

                                                                                                                                                             PSD density (count/1000mm²) 600
                         WT                                                            KO                                             PSD                                                                                b                          Timebin (hr)                                   Timebin (hr)                            d                         Timebin (hr)                           (a) Distance moved of PTPδ



                                                                                                                                                               500                                                             150                                                                                                               150                                                        global KO and EMX1-cre cKO
                                                                                                                                                                                                                                                                                                                                                                                                            mice (b) Immobility duration of


                                                                                                                                                               400                                                             120                                                                                                               120                                                        PTPδ global KO and EMX1-cre

                                                                                                                                                                                                                                                                                                                                                                                                            cKO mice. (c) meA mice
                                                                                                                                                                                                                                                                                                                                                                                                                                                    –/–
                                                                                                                                                               300                                                                                                                                                                                                                                          recapitulate the hyperactivity
                                                                                                                                                                                                                                  90                                                                                                               90


                                                                                                                                                               200                                                            Immobility duration (min)                                                                                         Immobility duration (min)                                   seen in the KO and cKO mice.
                                                                                                                                                                                                                                                                                                                                                                                                                             –/–
                                                                                                                                                                                                                                  60                                                                                                               60                                                       (d) meA mice recapitulate the

                                                                                                                                                               100                                                                                                                                                                                                                                          immobility duration seen in KO


                                                                                                                                                                                                                                  30                                                                                                               30                                                       and cKO mice. Data recorded
                                                                                                                                                                    0                                                                                                                                                                                                                                       over 72 hours was averaged to
                                                                                                                                                                            WT          KO

                       Figure 2. PTPδ deletion leads to functional and structural impairments                                                                                                                                       0                                                                                                                0                                                      timebin-matched 24 hours.


                       (a) Design and western blot confirmation of PTPδ KO mice. (b) Input/Output ratios in                                                                                                                                3 6 9 12 15 18 21 24                           3 6 9 12 15 18 21 24                                              3 6 9 12 15 18 21 24


                       the SLM of the CA1. (c) EM analysis of PSD density in the SLM of the CA1.                                                                                                                                                    Timebin (hr)                                   Timebin (hr)                                                      Timebin (hr)





              a       4.5                                                                                                                                  Figure 6. Sleep impairment in PTPδ and meA                                                                                        a




                                                                       Pyk2
                                                                                                          ARHGAP26
                                                                       Src                              PDHA1                                              deletion mice as measured by EEG/EMG                                                                                                        180                                          [WAKE]                                          [NREM]                                          [REM]       24
                      4.0         PTPRD;PTPRS;PTPRF                                                         PCM-1;MBD1                                     (a) EMX1-cre;cKO mice display increase WAKE                                                                                                 150                                                                                                                                      ns              20

                                                   IGF1R;INSR                                                 IRS2                                         duration and decreased NREM duration. (b) meA
                                                                                                               MAG

                      3.5                                  CLCN6                                                Epha4                                      deletion mice display increase WAKE duration and                                                                                            120                                                                                                                                                      16
                                                                Yes                                              MAG

                                        CKMT2;CKMT1A                                                              SLC38A2                                  decreased NREM and REM duration
                      3.0         IL1RAPL1                    Hck                                                 JNK2                                                                                                                                                                           Duration (min)  WAKE, NREM  90                                                                                                                                 12     REM  Duration (min)
                    -log 10 (p-vaule)   2.5  IL1RAPL1 TANC2                                                         PCM-1                             c           WT    P2     KO          WT           KO           WT          KO                                                                      60                                                                                                                                                     8
                                                                                                                   MAG
                                                              Arg
                                                          Kv1.1
                                                                                                                           PDHA1

                                                                                                                    CPD
                                                                                                                                                                                                SPM
                                                                                                                                                                                                                          PSD
                                                        TGM5
                                                                                                                    FGFR3
                      2.0
                                                                                                                                                                                                                                                                                                                                                                                                                                                                4
                                                                                                                                                                                                                                                                                                         30
                                                         SYT7
                                                                                                                     DDX27
                                                                                                                                                                                                                                                                                                                      cWT
                                                       piccolo
                                                                                                                     ATP1A3
                                                                                                                                                                                                                                                                                                                      EMX1-cre; cKO
                      1.5
                                              ARHGAP27
                                                                                                                     OPALIN
                                                         ACLY                                                        CRMP-2                                                                                                                      IL1RAPL1                                                   0      3 6 9 12 15 18 21 24                            3 6 9 12 15 18 21 24                            3 6 9 12 15 18 21 24                         0
                                                                                                                                                                                                                                                 [IB: anti-IL1RAPL1]
                                                                                                                    NYAP2
                      1.0                            EHOC-1                                                         PNPLA8                                                                                                                                                                                                  Timebin (hr)                                    Timebin (hr)                                    Timebin (hr)
                                                   CASKIN1                                                          HSPE1
                                                         KIFC2                                                     PDHA1                                                                                                                         PSD-95
                      0.5                             FKBP12                                                       PDHA1                                                                                                                         [IB: anti-PSD-95]                          b
                                                       CMTM4                                                      GPRC5B                                                                                                                                                                               180                                         [WAKE]                                          [NREM]                                           [REM]       24
                      0.0                                                                                                                                                                                                                        Synaptophysin

                              -5         -4          -3          -2          -1          0           1           2           3          4           5                                                                                            [IB: anti-Synaptophysin]                              150                                                                                                                                                      20


                                                                         log (Fold change)                                                                                                                                                       β-actin                                               120                                                                                                                                                      16

                                                                                2
                  b            Whole brain lysate                               IP: IL1RAPL1                                                                                                                                                     [IB: anti-β-actin, stripped]                                                                                                                                             ns




                               WT KO WT KO                                 WT KO WT KO                                                                                                                                                                                                           Duration (min)  WAKE, NREM  90                                                                                                                                 12     REM  Duration (min)
                                                                                                                                                               Figure 3. PTPδ deletion leads to significant


                                                                                                                       pTyr, IL1RAPL1                          dephosphorylation of IL1RAPL1 and reduced                                                                                                 60                                                                                                                                                     8

                                                                                                                       [IB: anti-pTyr (4G10)]
                                                                                                                                                               localization to the post synaptic density                                                                                                 30                                                                                                                                                     4



                                                                                                                       IL1RAPL1                                (a) pTyrosine phosphoscan results (b)                                                                                                                  meA   +/+
                                                                                                                                                                                                                                                                                                                      meA
                                                                                                                                                                                                                                                                                                                            –/–
                                                                                                                       [IB: anti-IL1RAPL1, stripped]           Immunoprecipication of IL1RAPL1 followed by pTyr                                                                                            0                                                                                                                                                    0
                                                                                                                                                               western blot confirms phosphoscan results (c) P2,                                                                                                  3 6 9 12 15 18 21 24                             3 6 9 12 15 18 21 24                            3 6 9 12 15 18 21 24

                                                                                                                       β-actin                                 SPM, and PSD fraction western blotting                                                                                                                       Timebin (hr)                                    Timebin (hr)                                    Timebin (hr)

                                                                                                                       [IB: anti-β-actin, stripped]
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