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Autophagy controls tumor cell proliferation








                                                                                                            by promoting Notch1-IC degradation






















                                                                                                         School of Biological Sciences and Technology, Chonnam National University, Yongbong-dong, Buk-ku, Gwangju, 500-757, Republic of Korea



                                                                                                         *Corresponding author : Hee-Sae Park, e-mail : proteome@jnu.ac.kr





















                                                                     Abstract                                                                                                                                                                                                                                                                  Result









               Autophagy is a highly conserved mechanism that degrades long-


             lived proteins and dysfunctional organelles, and contributes to cell


             fate. In this study, autophagy attenuates Notch1 signaling by                                                                                                                                  Figure 1                                                                                                                                                           Figure 2

             degrading the Notch1 intracellular domain (Notch1-IC). Nutrient-                                                                                                                               Autophagy attenuates Notch1 signaling                                                                                                                              Autophagy induces Notch1-IC degradation


             deprivation promotes Notch1-IC phosphorylation by MEKK1 and

             phosphorylated Notch1-IC is recognized by Fbw7 E3 ligase. The


             ubiquitination of Notch1-IC by Fbw7 is essential for the interaction


             between Notch1-IC and p62 and for the formation of aggregates.

             Inhibition of Notch1 signaling prevents the transformation of breast


             cancer cells, tumor progression, and metastasis. The expression of

             Notch1 and p62 is inversely correlated with Beclin1 expression in


             human breast cancer patients. These results show that autophagy


             inhibits Notch1 signaling by promoting Notch1-IC degradation and

             therefore plays a role in tumor suppression. .










                                                                Introduction                                                                                                                           (A) Rapamycin (Rap) treatment and nutrient deprivation attenuate the Notch1-IC transcriptional activity.
                                                                                                                                                                                                       HEK293 cells were transfected with the 4xCSL-Luc, together with pcDNA3 or Myc-Notch1-IC plasmids. After
                                                                                                                                                                                                       48 h of transfection, the cells were treated with 2 μM rap, 10 mM 3-MA, or nutrient deprivation (ND) for 6 h,
                                                                                                                                                                                                       as indicated, and analyzed for Notch1-IC transcriptional activity (fold induction). (B) Nutrient deprivation
                                                                                                                                                                                                       reduces Notch1 target gene mRNA expression. HEK293 cells with pcDNA3 or Myc-Notch1-IC plasmids were                                                              (A) Notch1-IC is degraded by autophagy. HEK293 cells were treated with 2 μM rap or nutrient-deprivation

                                                                                                                                                                                                       starved for 4 hr. After RNA extraction and cDNA synthesis, quantitative RT-PCR was performed. (C)                                                                medium. Each condition was reversed by treating 10 mM 3-MA, autophagy inhibitor. The cell lysates were
               Notch1 is a type 1 single transmembrane receptor protein                                                                                                                                Knockdown of autophagy mediator LC3, Beclin1, and p62 induce Notch1-IC transcriptional activity. HEK293                                                          subjected to immunoblotting. (B) Half-life of Notch1-IC was extended in Atg5−/− and Atg7−/− MEFs. WT and


            important for cell fate specification, differentiation in various                                                                                                                          cells with pcDNA3 or Myc-Notch1-IC plasmids were transfected with shCon, shBeclin1, or shLC3                                                                     Atg5−/− and Atg7−/− MEFs were starved for the indicated durations and subjected to immunoblotting.
                                                                                                                                                                                                       respectively. After transfection, the cells were analyzed for Notch1-IC transcriptional activity. (D) Knockdown
                                                                                                                                                                                                                                                                                                                                                                        Notch1-IC levels were quantified by ImageJ (Right panel). (C) Atg5−/− MEFs with reintroduction of Atg5
            systems and neuronal development such as neurogenesis and                                                                                                                                  of Atg5 enhanced Notch1 signaling. Atg5+/+ and Atg5−/− MEFs were transfected with the 4xCSL-Luc,                                                                 promotes the Notch1-IC degradation. Atg5−/− MEFs with pcDNA3 or GFP-Atg5 were starved for the
                                                                                                                                                                                                       together with pcDNA3 or Myc-Notch1-IC. After transfection, the cells were analyzed for Notch1-IC
                                                                                                                                                                                                                                                                                                                                                                        indicated durations and subjected to immunoblotting. (D) The continued degradation of Notch1-IC in Atg5−/−
            neural stem cell maintenance.[1] Notch1 signaling is aberrantly                                                                                                                            transcriptional activity. The relative luciferase activities were normalized with β-galactosidase activity. Data                                                 MEFs is proteasome-dependent. WT and Atg5−/− MEFs were starved for 2, 4, or 8 h with 1 μM MG132 or
                                                                                                                                                                                                       represent the mean ± SD from independent experiments performed in triplicate. ‘ND’ means nutrient-
            activated in breast cancer, and increased expression of the Notch1                                                                                                                         deprivation. **p < 0.01; ***p < 0.001.                                                                                                                           100 μM BFA1 to inhibit the different degradation systems and lysed for immunoblotting analysis. LC3 and
                                                                                                                                                                                                                                                                                                                                                                        p62 were used as autophagy markers. Results are representative of at least 3 independent experiments. ‘Nut’
            intracellular domain (Notch1-IC) is associated with low survival rates                                                                                                                                                                                                                                                                                      means nutrient-rich. β-actin was used as a loading control.


            in various cancers, including breast cancer.[2] Proliferation of cells

            derived from these cancers can be suppressed by pharmacological


            inhibition of Notch1. Therefore, preventing the generation of Notch1-


            IC is a potential strategy for treating various cancers.                                                                                                                                     Figure 3                                                                                                                                                        Figure 4

              Genetic analysis of Drosophila melanogaster revealed a possible                                                                                                                            Nutrient-deprivation promotes the interaction between Notch1-IC                                                                                                 Ubiquitination of Notch1-IC under nutrient-deprivation condition


            link between autophagy and the Notch1 signaling pathway involved                                                                                                                             and LC3, which is facilitated by the interaction between Notch1-                                                                                                by Fbw7 is critical for Notch1-IC-p62 interaction and degradation

            in cell fate determination.[3] The mechanistic target of rapamycin                                                                                                                           IC with p62.                                                                                                                                                    via autophagy.


            (mTOR), a negative regulator of autophagy, activates Notch1


            signaling.[5] The lack of autophagy triggers precocious activation of

            Notch1 signaling during Drosophila oogenesis, suggesting that


            autophagy suppresses Notch1 signaling. However, the relationship

            between autophagy and Notch1 signaling in tumorigenesis and the


            precise regulatory mechanism is not well known. Many reports


            found that defective autophagy causes various cancers. Beclin1 or

            UVRAG are monoallelically deleted in a high percentage of human


            breast and colon cancers respectively.

            Atg5, a component of the ubiquitin-like protein conjugation systems,


            and Beclin1 have tumor suppressor effects in mouse xenograft


            models. It is clear these autophagy-related genes are involved in the

            regulation of tumorigenesis but it is not clear whether autophagy


            attenuates the tumorigenesis through the inhibition of oncogenic

            signal transduction.


            In this study, we evaluated the crosstalk between autophagy and


            Notch1                signaling                 during             tumorigenesis.                         We           discovered                    that

            autophagic stimuli induced MEKK1 to phosphorylate the T2512


            residue of Notch1-IC enabling its ubiquitination and degradation by

            Fbw7 ubiquitin ligase.[4] We also found that the expression of                                                                                                                                                                                                                                                                                              (A) Nutrient-deprivation promotes ubiquitination of Notch1-IC. HEK293 cells transfected with indicated
                                                                                                                                                                                                                                                                                                                                                                        plasmids were cultured with BFA1 under nutrient-rich or nutrient-deprivation conditions. Cell lysates were
            Notch1 and Beclin1 protein in tissues of patients with breast cancer                                                                                                                        (A) Localization of Notch1-IC and LC3 under nutrient-rich and nutrient-deprivation conditions. HEK293 cells                                                     precipitated by Ni-NTA and were subjected to immunoblotting using anti-Myc antibody. (B) Nutrient-
                                                                                                                                                                                                        with GFP-LC3 were cultured with 0.1 μM BFA1 under nutrient-rich and nutrient-deprivation conditions. The
            were negatively correlated. Notch1 inhibition significantly decreased                                                                                                                       cells were stained with anti-Notch1-IC V1744 antibody and ToPro3. (B) Notch1-IC binds to LC3.                                                                   deprivation promotes the interaction of Notch1-IC with Fbw7. HEK293 cells transfected with indicated
                                                                                                                                                                                                                                                                                                                                                                        plasmids were cultured with BFA1 under nutrient-rich or nutrient-deprivation conditions. Immunoprecipitates
                                                                                                                                                                                                        Immunoprecipitates by anti-IgG control or anti-LC3 antibody from HEK293 cells cultured with BFA1 under
            growth, invasion, and tumorigenic activity of Beclin1 knockdown                                                                                                                             nutrient-rich or nutrient-deprivation conditions were subjected to immunoblotting using anti-Notch1 antibody.                                                   by anti-Myc antibody from the cells were subjected to immunoblotting using anti-Flag antibody. (C) Under
                                                                                                                                                                                                                                                                                                                                                                        nutrient-deprivation conditions, the ubiquitination of Notch1-IC is Fbw7-dependent. HEK293 cells transfected
            cells. These data suggested that autophagy-induced MEKK1-                                                                                                                                   (C) p62 promotes the interaction of Notch1-IC with LC3. Immunoprecipitates by anti-GFP antibody from                                                            with indicated plasmids were cultured with BFA1 under nutrient-deprivation conditions. Immunoprecipitates
                                                                                                                                                                                                        HEK293 cells transfected with indicated plasmids were subjected to immunoblotting using anti-Myc antibody.
                                                                                                                                                                                                                                                                                                                                                                        by anti-Myc antibody from the cells were subjected to immunoblotting using anti-HA antibody. (D)
            mediated phosphorylation of Notch1-IC at the T2512 residue plays                                                                                                                            (D) Notch1-IC binds to p62. Immunoprecipitates by anti-IgG control or anti-p62 antibody from HEK293 cells                                                       Ubiquitination of Notch1-IC is decreased by shFbw7. HEK293 cells with shCon or shFbw7 were transfected
                                                                                                                                                                                                        cultured with BFA1 under nutrient-rich or nutrient-deprivation conditions were subjected to immunoblotting
            an important role in cancer prevention and could be a promising                                                                                                                             using anti-Notch1 antibody. (E) Knockdown of p62 decreases the interaction of Notch1-IC with LC3. HEK293                                                        with indicated plasmids. The cells were cultured with BFA1 under nutrient-rich or nutrient-deprivation
                                                                                                                                                                                                                                                                                                                                                                        conditions. Immunoprecipitates by anti-HA antibody from the cells were subjected to immunoblotting using
                                                                                                                                                                                                        cells with shCon or shp62 were cultured with BFA1 under nutrient-rich or nutrient-deprivation conditions.
            strategy to prevent cancer progression.                                                                                                                                                     Immunoprecipitates by anti-IgG control or anti-LC3 antibody from the cells were subjected to immunoblotting                                                     anti-Myc antibody. (E) F-box domain in Fbw7 is required for Notch1-IC and p62 interaction.

                                                                                                                                                                                                        using anti- Notch1 antibody. (F) p62 is important for Notch1-IC aggregation and translocalization to                                                            Immunoprecipitates by anti-Myc antibody from HEK293 cells transfected with indicated plasmids were
                                                                                                                                                                                                        autophagosome. HEK293 cells were transfected with shCon or shp62. The cells were cultured with BFA1                                                             subjected to immunoblotting using anti-HA antibody. (F) Knockdown of Fbw7 decreases the interaction of
                                                                                                                                                                                                        under nutrient-rich medium or nutrient-deprivation conditions and stained with anti-p62, anti-Notch1-IC                                                         Notch1-IC with p62. HEK293 cells with shCon or shFbw7 were cultured with BFA1 under nutrient-rich or
                                                                                                                                                                                                                                                                                                                                                                        nutrient-deprivation conditions. Immunoprecipitates by anti-IgG control or anti-p62 antibody from the cells
                                                                                                                                                                                                        V1744 antibodies, and ToPro3. (G) Half-life of Notch1-IC was extended by knockdown of p62. HEK293 cells                                                         were subjected to immunoblotting using anti-Notch1 antibody. (G) Polyubiquitination is required for Notch1-IC
                                                                Conclusions                                                                                                                             with shCon or shp62 were starved for the indicated durations and subjected to immunoblotting. All images                                                        and p62 interaction. HEK293 cells with His-Ub or His-Ub-7KR were cultured with BFA1 under nutrient-rich or

                                                                                                                                                                                                        were confocal images of optical slice thickness ~1 μm. Scale bars represent 25 μm. Results are
                                                                                                                                                                                                                                                                                                                                                                        nutrient-deprivation conditions. Immunoprecipitates by anti-IgG control or anti-p62 antibody from the cells
                                                                                                                                                                                                        representative of at least 3 independent experiments. ***p < 0.001; ns: not significant (p > 0.05).
                                                                                                                                                                                                                                                                                                                                                                        were subjected to immunoblotting using anti-Notch1 antibody. Results are representative of at least 3
                                                                                                                                                                                                                                                                                                                                                                        independent experiments.




           • nutrient-deprivation                                   condition,                   MEKK1                  phosphorylates                           the

                 Notch1-IC T2512 residue enabling Fbw7 to recognize and


                 ubiquitinate the phosphorylated Notch1-IC.                                                                                                                                             Figure 5


                                                                                                                                                                                                        Notch1-IC phosphorylation by MEKK1 is critical for the regulation                                                                                                Figure 6

           • autophagy promotes the degradation of the Notch1 intracellular                                                                                                                             of Notch1-IC stability during nutrient-deprivation.                                                                                                              Negative correlation between Notch1-IC and autophagy in breast


                 domain via the phosphorylation of the T2512 residue by MEKK1,                                                                                                                                                                                                                                                                                           cancer

                 and therefore suppresses tumor cell growth and migration





           • autophagy decreases Notch1 signaling-dependent tumorigenesis.



















































                                                                                                                                                                                                         (A) Nutrient-deprivation promotes ubiquitination of Notch1-IC. HEK293 cells transfected with indicated

                                                                                                                                                                                                         plasmids were cultured with BFA1 under nutrient-rich or nutrient-deprivation conditions. Cell lysates were                                                       (A) Notch1-IC protein stability is increased by knockdown of Beclin1. HEK293 cells were transfected with
                                                                                                                                                                                                         precipitated by Ni-NTA and were subjected to immunoblotting using anti-Myc antibody. (B) Nutrient-                                                               shBeclin1 in dose-dependent manner and subjected to immunoblotting using anti-Notch1-IC, anti-Beclin1,
                                                                                                                                                                                                         deprivation promotes the interaction of Notch1-IC with Fbw7. HEK293 cells transfected with indicated                                                             and anti-β-actin antibodies. (B–E) MDA-MB-231 cells stably expressing shCon or shBeclin1 were treated
                                                                                                                                                                                                         plasmids were cultured with BFA1 under nutrient-rich or nutrient-deprivation conditions. Immunoprecipitates                                                      with or without 2 μM DAPT. B. Knockdown of Beclin1 induces wound-healing migration ability. The wound
                                                                                                                                                                                                         by anti-Myc antibody from the cells were subjected to immunoblotting using anti-Flag antibody. (C) Under                                                         closure was quantified for the indicated durations and was analyzed by measuring the width of the remaining
                                                                                                                                                                                                         nutrient-deprivation conditions, the ubiquitination of Notch1-IC is Fbw7-dependent. HEK293 cells transfected                                                     unmigrated area. Wound area is plotted (right). C. Knockdown of Beclin1 induces cell migration ability. The
                                                                                                                                                                                                         with indicated plasmids were cultured with BFA1 under nutrient-deprivation conditions. Immunoprecipitates                                                        cells were seeded onto fibronectin-coated Transwell inserts. The migrating cells were stained by DAPI and
                                                                                                                                                                                                         by anti-Myc antibody from the cells were subjected to immunoblotting using anti-HA antibody. (D)                                                                 quantified by counting. The number of migrated cells is plotted (right). D. Knockdown of Beclin1 induces cell
                                                                                                                                                                                                         Ubiquitination of Notch1-IC is decreased by shFbw7. HEK293 cells with shCon or shFbw7 were transfected                                                           invasion ability. The cells were seeded onto a Matrigel invasion chamber. The invading cells were stained by
                                                                                                                                                                                                         with indicated plasmids. The cells were cultured with BFA1 under nutrient-rich or nutrient-deprivation                                                           DAPI and quantified by counting. The number of migrated cells is plotted (right). E. Knockdown of Beclin1
                                                                  References                                                                                                                             conditions. Immunoprecipitates by anti-HA antibody from the cells were subjected to immunoblotting using                                                         induces the ability of the cells to form anchorage-dependent colonies. The cells were seeded onto 24 well

                                                                                                                                                                                                         anti-Myc antibody. (E) F-box domain in Fbw7 is required for Notch1-IC and p62 interaction.
                                                                                                                                                                                                                                                                                                                                                                          plates at a density of 100 cells per well and were incubated for 10 days. The cell colonies were stained with
                                                                                                                                                                                                         Immunoprecipitates by anti-Myc antibody from HEK293 cells transfected with indicated plasmids were
                                                                                                                                                                                                         subjected to immunoblotting using anti-HA antibody. (F) Knockdown of Fbw7 decreases the interaction of                                                           crystal violet. The graph shows the number of colonies formed by each cell. (F) Knockdown of Beclin1
                                                                                                                                                                                                                                                                                                                                                                          induces the ability of the cells to form anchorage-independent colonies. The cells were plated at a density of
                                                                                                                                                                                                         Notch1-IC with p62. HEK293 cells with shCon or shFbw7 were cultured with BFA1 under nutrient-rich or                                                             5 × 103 cells in a top medium containing 0.3% agarose and were incubated for 10 days. The cell colonies
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                2.   Pece S, Serresi M, Santolini E, Capra M, Hulleman E, Galimberti V, Zurrida S, Maisonneuve P, Viale G, Di Fiore PP. Loss                                                             and p62 interaction. HEK293 cells with His-Ub or His-Ub-7KR were cultured with BFA1 under nutrient-rich or                                                       Lysates of paired human normal and breast cancer tissues were subjected to immunoblotting using anti-
                     of negative regulation by Numb over Notch is relevant to human breast carcinogenesis. J Cell Biol. 2004; 167:215–21. doi:                                                           nutrient-deprivation conditions. Immunoprecipitates by anti-IgG control or anti-p62 antibody from the cells                                                      Notch1, anti-Beclin1, anti-p62, and anti-β-actin antibodies. (H) Ranking plot of each protein in normal and

                     10.1083/jcb.200406140.                                                                                                                                                              were subjected to immunoblotting using anti-Notch1 antibody. Results are representative of at least 3                                                            breast tumor tissues. The difference in Notch1-IC, Beclin1 and p62 between normal and tumor tissue were
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